IndraLab

Continuous Gene Set Analysis

This application performs GSEA on continuous data using INDRA CoGEx.

The corresponding REST API endpoint for this analysis is /api/continuous_analysis. You can find it on the API Docs under the section 'Analysis Queries'.

The minimum number of evidences, if using INDRA path-based analysis.
The minimum belief score, if using INDRA path-based analysis.
The alpha is the threshold for significance in the Fisher's exact test with which multiple hypothesis testing correction will be executed.
The source of gene sets. Only one can be run at a time because this analyis is computationally intensive
The number of permutations used with GSEA
The name of the column containing gene names (HGNC symbols) in the uploaded file.
The name of the column containing the ranking metric values in the uploaded file.