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INDRA Discovery
Discrete GSEA
Signed GSEA
Continuous GSEA
Discrete MSEA
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Continuous Gene Set Analysis
This application performs GSEA on continuous data using INDRA CoGEx.
Minimum Evidence Count
The minimum number of evidences, if using INDRA path-based analysis.
Minimum Belief
The minimum belief score, if using INDRA path-based analysis.
Keep insignificant results (leads to long results lists)
Alpha
The alpha is the threshold for significance in the Fisher's exact test with which multiple hypothesis testing correction will be executed.
Gene Set Source
Gene Ontology
Reactome
WikiPathways
HPO Phenotypes
INDRA Upstream
INDRA Downstream
The source of gene sets. Only one can be run at a time because this analyis is computationally intensive
File
Make sure the uploaded file contains at least two columns: one with gene names and one with the values of the ranking metric. The first row od the file should contain the column names.
Species
Human
Rat
Mouse
Permutations
The number of permutations used with GSEA
Gene Name Column
The name of the column containing gene names (HGNC symbols) in the uploaded file.
Ranking Metric Column
The name of the column containing the ranking metric values in the uploaded file.