Continuous Gene Set Analysis

Minimum Evidence Count The minimum number of evidences, if using INDRA path-based analysis.

Minimum Belief The minimum belief score, if using INDRA path-based analysis.

Keep insignificant results (leads to long results lists)

Alpha The alpha is the threshold for significance in the Fisher's exact test with which multiple hypothesis testing correction will be executed.

Gene Set Source

Gene Ontology

Reactome

WikiPathways

HPO Phenotypes

INDRA Upstream

INDRA Downstream

The source of gene sets. Only one can be run at a time because this analyis is computationally intensive

File

Species

Human

Rat

Mouse

Permutations The number of permutations used with GSEA

IndraLab