IndraLab

Continuous Gene Set Analysis

This application performs GSEA on continuous data using INDRA CoGEx.

The corresponding REST API endpoint for this analysis is /api/continuous_analysis. You can find it on the API Docs under the section 'Analysis Queries'.

The name of the column containing gene names (HGNC symbols) in the uploaded file.
The name of the column containing the ranking metric values in the uploaded file.
The minimum number of evidences for a relationship to be included.
The minimum belief score for a relationship to be included.
The alpha is the threshold for significance in the Fisher's exact test with which multiple hypothesis testing correction will be executed.
The number of permutations used with GSEA
The source of gene sets. Only one can be run at a time because this analyis is computationally intensive