The INDRA Biomedical Discovery Engine is built on INDRA CoGEx, a graph database integrating causal relations, ontological relations, properties, and data, assembled at scale automatically from the scientific literature and structured sources.
Biological Entities
Clinical Trials
Publications
Evidences
Research Projects
Patents
Performs gene set enrichment analysis using INDRA CoGEx.
Perform signed gene set enrichment analysis using INDRA CoGEx and the Reverse Causal Reasoning algorithm.
Perform gene set enrichment analysis on continuous data using INDRA CoGEx.
Perform metabolite set enrichment analysis using INDRA CoGEx.
Curate networks induced by genes associated with a given Gene Ontology term.
Curate statements from publications annotated with the given MeSH term.
Curate statements from a given publication.
Curate statements for the subnetwork induced by given entities.
Curate statements about transcription factors regulating the amounts of their targets not already appearing in databases like Pathway Commons.
Curate statements about kinases phosphorylating targets not already appearing in databases like PhosphoSitePlus.
Curate statements about phosphatases dephosphorylating targets not already appearing in databases like Pathway Commons.
Curate statements about deubiquitinating enzymes.
Curate gene-GO term associations that are not already available as GO annotations.
Curate protein-protein interactions not already appearing in databases like BioGRID.
Curate miRNA-target interactions not already appearing in databases like miRTarBase.
Curate intrensically disordered proteins' interactions not already appearing in databases.